eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial

Ethier Jean-Francois, Curcin Vasa, McGilchrist Mark M., Choi Keung Sarah N. Lim, Zhao Lei, Andreasson Anna, Bródka Piotr, Michalski Radoslaw, Arvanitis Theodoros N., Mastellos Nikolaos, Burgun Anita, Delaney Brendan C. .
2017. Int J Med Inform; 106():17-24. doi:10.1016/j.ijmedinf.2017.06.006

The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience

Jannot Anne-Sophie, Zapletal Eric, Avillach Paul, Mamzer Marie-France, Burgun Anita, Degoulet Patrice .
2017. Int. J. Med. Inform.; 102():21-28. doi:10.1016/j.ijmedinf.2017.02.006

The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience

Jannot Anne-Sophie, Zapletal Eric, Avillach Paul, Mamzer Marie-France, Burgun Anita, Degoulet Patrice .
2017. Int J Med Inform; 102():21-28. doi:10.1016/j.ijmedinf.2017.02.006

The Diagnosis-Wide Landscape of Hospital-Acquired AKI

Jannot Anne-Sophie, Burgun Anita, Thervet Eric, Pallet Nicolas .
2017. Clin. J. Am. Soc. Nephrol.; 12(6):874-884. doi:10.2215/CJN.10981016

The Diagnosis-Wide Landscape of Hospital-Acquired AKI

Jannot Anne-Sophie, Burgun Anita, Thervet Eric, Pallet Nicolas .
2017. Clin J Am Soc Nephrol; 12(6):874-884. doi:10.2215/CJN.10981016

Successful treatment of Pseudomonas aeruginosa osteomyelitis with antibiotic monotherapy of limited duration

Laghmouche Nadir, Compain Fabrice, Jannot Anne-Sophie, Guigui Pierre, Mainardi Jean-Luc, Lonjon Guillaume, Bouyer Benjamin, Fernandez-Gerlinger Marie-Paule .
2017. J. Infect.; 75(3):198-206. doi:10.1016/j.jinf.2017.06.006

Roles of APOL1 G1 and G2 variants in sickle cell disease patients: kidney is the main target

Kormann Raphaël, Jannot Anne-Sophie, Narjoz Céline, Ribeil Jean-Antoine, Manceau Sandra, Delville Marianne, Joste Valentin, Prié Dominique, Pouchot Jacques, Thervet Eric, Courbebaisse Marie, Arlet Jean-Benoît .
2017. Br. J. Haematol.:. doi:10.1111/bjh.14842

Partnering with patients in translational oncology research: ethical approach

Mamzer Marie-France, Duchange Nathalie, Sylviane Darquy, Marvanne Patrice, Rambaud Claude, Marsico Giovanna, Cerisey Catherine, Scotte Florian, Burgun Anita, Badoual Cecile, Laurent-Puig Pierre, Herve Christian .
2017. J. Transl. Med.; 15():74. doi:10.1186/s12967-017-1177-9

One-month apparent diffusion coefficient correlates with response to radiofrequency ablation of hepatocellular carcinoma

Barat Maxime, Fohlen Audrey, Cassinotto Christophe, Jannot Anne Sophie, Dautry Raphael, Pelage Jean-Pierre, Boudiaf Mourad, Pocard Marc, Eveno Clarisse, Taouli Bachir, Soyer Philippe, Dohan Anthony .
2017. J Magn Reson Imaging; 45(6):1648-1658. doi:10.1002/jmri.25521

Leveraging the EHR4CR platform to support patient inclusion in academic studies: challenges and lessons learned

Girardeau Yannick, Doods Justin, Zapletal Eric, Chatellier Gilles, Daniel Christel, Burgun Anita, Dugas Martin, Rance Bastien .
2017. BMC Med. Res. Methodol.; 17():36. doi:10.1186/s12874-017-0299-3

Knowledge of medical students on National Health Care System: A French multicentric survey

Feral-Pierssens A.-L., Jannot A.-S. .
2017. Rev Epidemiol Sante Publique:. doi:10.1016/j.respe.2017.05.008

Induction of resident memory T cells enhances the efficacy of cancer vaccine.

Nizard Mevyn, Roussel Helene, Diniz Mariana O., Karaki Soumaya, Tran Thi, Voron Thibault, Dransart Estelle, Sandoval Federico, Riquet Marc, Rance Bastien, Marcheteau Elie, Fabre Elizabeth, Mandavit Marion, Terme Magali, Blanc Charlotte, Escudie Jean-Baptiste, Gibault Laure, Barthes Francoise Le Pimpec, Granier Clemence, Ferreira Luis C. S., Badoual Cecile, Johannes Ludger, Tartour Eric .
2017. Nat Commun; 8():15221. doi:10.1038/ncomms15221

Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack

Garcelon Nicolas, Neuraz Antoine, Benoit Vincent, Salomon Rémi, Kracker Sven, Suarez Felipe, Bahi-Buisson Nadia, Hadj-Rabia Smail, Fischer Alain, Munnich Arnold, Burgun Anita .
2017. Journal of Biomedical Informatics; 73():51-61. doi:10.1016/j.jbi.2017.07.016

Filtering Entities to Optimize Identification of Adverse Drug Reaction From Social Media: How Can the Number of Words Between Entities in the Messages Help?

Abdellaoui Redhouane, Schück Stéphane, Texier Nathalie, Burgun Anita .
2017. JMIR Public Health Surveill; 3(2):e36. doi:10.2196/publichealth.6577

Evaluation of the peritoneal carcinomatosis index with CT and MRI

Dohan A., Hoeffel C., Soyer P., Jannot A. S., Valette P.-J., Thivolet A., Passot G., Glehen O., Rousset P. .
2017. Br J Surg; 104(9):1244-1249. doi:10.1002/bjs.10527

Erratum to: Partnering with patients in translational oncology research: ethical approach

Mamzer Marie-France, Duchange Nathalie, Darquy Sylviane, Marvanne Patrice, Rambaud Claude, Marsico Giovanna, Cerisey Catherine, Scotté Florian, Burgun Anita, Badoual Cécile, Laurent-Puig Pierre, Hervé Christian .
2017. J Transl Med; 15(1):80. doi:10.1186/s12967-017-1181-0

Cardiovascular risk associated with high sodium-containing drugs: A systematic review

Perrin Germain, Korb-Savoldelli Virginie, Karras Alexandre, Danchin Nicolas, Durieux Pierre, Sabatier Brigitte .
2017. PLoS ONE; 12(7):e0180634. doi:10.1371/journal.pone.0180634

Breast cancer family history leads to early breast cancer detection and optimal management

Jannot Anne-Sophie, Usel Massimo, Bouchardy Christine, Schubert Hyma, Rapiti Elisabetta .
2017. Cancer Causes Control:. doi:10.1007/s10552-017-0928-5

Biological toxicities as surrogate markers of efficacy in patients treated with mTOR inhibitors for metastatic renal cell carcinoma

Jebali M., Elaidi R., Brizard M., Fouque J., Takouchop C., Sabatier B., Oudard S., Medioni J. .
2017. BMC Cancer; 17(1):27. doi:10.1186/s12885-016-2993-7

Artificial intelligence applied to radiation oncology

Bibault J.-E., Burgun A., Giraud P. .
2017. Cancer Radiother.; 21(3):239-243. doi:10.1016/j.canrad.2016.09.021

An ontological analysis of medical Bayesian indicators of performance

Barton Adrien, Ethier Jean-Francois, Duvauferrier Regis, Burgun Anita .
2017. J. Biomed. Semant.; 8():UNSP 1. doi:10.1186/s13326-016-0099-4

A Fast Healthcare Interoperability Resources (FHIR) layer implemented over i2b2

Boussadi Abdelali, Zapletal Eric .
2017. BMC Med Inform Decis Mak; 17(1):120. doi:10.1186/s12911-017-0513-6

Using Literature-Based Discovery to Explain Adverse Drug Effects

Hristovski Dimitar, Kastrin Andrej, Dinevski Dejan, Burgun Anita, Ziberna Lovro, Rindflesch Thomas C. .
2016. J. Med. Syst.; 40(8):185. doi:10.1007/s10916-016-0544-z

The Plasmair Decontamination System Is Protective Against Invasive Aspergillosis in Neutropenic Patients

Fernandez-Gerlinger Marie-Paule, Jannot Anne-Sophie, Rigaudeau Sophie, Lambert Juliette, Eloy Odile, Mignon François, Farhat Hassan, Castaigne Sylvie, Merrer Jacques, Rousselot Philippe .
2016. Infect Control Hosp Epidemiol; 37(7):845-851. doi:10.1017/ice.2016.81

Temporal trends and changing profile of adults with congenital heart disease undergoing heart transplantation

Cohen Sarah, Houyel Lucile, Guillemain Romain, Varnous Shaida, Jannot Anne-Sophie, Ladouceur Magalie, Boudjemline Younes, Bonnet Damien, Iserin Laurence .
2016. Eur. Heart J.; 37(9):783-789. doi:10.1093/eurheartj/ehv628

Remote Monitoring of Cardiac Implantable Devices: Ontology Driven Classification of the Alerts

Rosier Arnaud, Mabo Philippe, Temal Lynda, Van Hille Pascal, Dameron Olivier, Deleger Louise, Grouin Cyril, Zweigenbaum Pierre, Jacques Julie, Chazard Emmanuel, Laporte Laure, Henry Christine, Burgun Anita .
2016. Stud Health Technol Inform; 221():59-63. doi:

Rationale and design of the multicenter randomized trial investigating the effects of levosimendan pretreatment in patients with low ejection fraction (≤40 %) undergoing CABG with cardiopulmonary bypass (LICORN study)

Caruba Thibaut, Hourton Delphine, Sabatier Brigitte, Rousseau Dominique, Tibi Annick, Hoffart-Jourdain Cécile, Souag Akim, Freitas Nelly, Yjjou Mounia, Almeida Carla, Gomes Nathalie, Aucouturier Pascaline, Djadi-Prat Juliette, Menasché Philippe, Chatellier Gilles, Cholley Bernard .
2016. J Cardiothorac Surg; 11(1):127. doi:10.1186/s13019-016-0530-z

Prostate cancer characteristics and outcome in renal transplant recipients: results from a contemporary single center study

Pettenati Caroline, Jannot Anne-Sophie, Hurel Sophie, Verkarre Virginie, Kreis Henri, Housset Martin, Legendre Christophe, Méjean Arnaud, Timsit Marc-Olivier .
2016. Clin Transplant; 30(8):964-971. doi:10.1111/ctr.12773

Personalized and automated remote monitoring of atrial fibrillation

Rosier Arnaud, Mabo Philippe, Temal Lynda, Van Hille Pascal, Dameron Olivier, Deleger Louise, Grouin Cyril, Zweigenbaum Pierre, Jacques Julie, Chazard Emmanuel, Laporte Laure, Henry Christine, Burgun Anita .
2016. Europace; 18(3):347-352. doi:10.1093/europace/euv234

Medicinal leech therapy and Aeromonas spp. infection

Verriere B., Sabatier B., Carbonnelle E., Mainardi J. L., Prognon P., Whitaker I., Lantieri L., Hivelin M. .
2016. Eur. J. Clin. Microbiol. Infect. Dis.; 35(6):1001-1006. doi:10.1007/s10096-016-2629-5

Linking health and administrative data for maternal, child and young adult health

Burgun A., Oksen D. V., Kuchinke W., Prokosch H.-U., Ganslandt T., Buchan I., van Staa T., Cunningham J., Gjerstorff M. L., Dufour J.-C., Gibrat J.-F., Nikolski M., Verger P., Cambon-Thomsen A., Masella C., Lettieri E., Bertele P., Salokannel M., Thiebaut R., Persoz C., Chene G., Ohmann C. .
2016. Eur. J. Public Health; 26():157-157. doi:

Interventions to reduce nurses' medication administration errors in inpatient settings: A systematic review and meta-analysis

Berdot Sarah, Roudot Marjorie, Schramm Catherine, Katsahian Sandrine, Durieux Pierre, Sabatier Brigitte .
2016. Int J Nurs Stud; 53():342-350. doi:10.1016/j.ijnurstu.2015.08.012

Integrating Heterogeneous Bio-medical Data for Cancer Research: the CARPEM infrastructure

Rance Bastien, Canuel Vincent, Countouris Hector, Laurent-Puig Pierre, Burgun Anita .
2016. Appl. Clin. Inform.; 7(2):260-274. doi:10.4338/ACI-2015-09-RA-0125

Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse

Garcelon Nicolas, Neuraz Antoine, Benoit Vincent, Salomon Rémi, Burgun Anita .
2016. J Am Med Inform Assoc:. doi:10.1093/jamia/ocw144

How do researchers determine the difference to be detected in superiority trials? Results of a survey from a panel of researchers

Gayet-Ageron Angèle, Jannot Anne-Sophie, Agoritsas Thomas, Rudaz Sandrine, Combescure Christophe, Perneger Thomas .
2016. BMC Med Res Methodol; 16():89. doi:10.1186/s12874-016-0195-2

French smoking cessation services provide effective support even to the more dependent

Baha Monique, Boussadi Abdelali, Le Faou Anne-Laurence .
2016. Prev Med; 90():34-38. doi:10.1016/j.ypmed.2016.06.024

Exploring and visualizing multidimensional data in translational research platforms.

Dunn William Jr, Burgun Anita, Krebs Marie-Odile, Rance Bastien .
2016. Brief Bioinform:. doi:10.1093/bib/bbw080

Big Data and machine learning in radiation oncology: State of the art and future prospects

Bibault Jean-Emmanuel, Giraud Philippe, Burgun Anita .
2016. Cancer Lett.; 382(1):110-117. doi:10.1016/j.canlet.2016.05.033

Automated bedside dispensing machine may significantly reduce nurses' medication administration errors in inpatient settings Response

Berdot Sarah, Roudot Marjorie, Schramm Catherine, Katsahian Sandrine, Durieux Pierre, Sabatier Brigitte .
2016. Int. J. Nurs. Stud.; 61():175-175. doi:

A Lack of Significant Effect of POR*28 Allelic Variant on Tacrolimus Exposure in Kidney Transplant Recipients

Jannot Anne-Sophie, Vuillemin Xavier, Etienne Isabelle, Buchler Mathias, Hurault de Ligny Bruno, Choukroun Gabriel, Colosio Charlotte, Thierry Antoine, Vigneau Cécile, Moulin Bruno, Rerolle Jean-Philippe, Heng Anne-Elizabeth, Subra Jean-Francois, Legendre Christophe, Beaune Philippe, Loriot Marie Anne, Thervet Eric, Pallet Nicolas .
2016. Ther Drug Monit; 38(2):223-229. doi:10.1097/FTD.0000000000000267

Using a snowflake data model and autocompletion to support diagnostic coding in acute care hospitals

Noussa-Yao Joseph, Boussadi Abdelali, Richard Monique, Heudes Didier, Degoulet Patrice .
2015. Stud Health Technol Inform; 210():334-338. doi:

Translational research platforms integrating clinical and omics data: a review of publicly available solutions

Canuel Vincent, Rance Bastien, Avillach Paul, Degoulet Patrice, Burgun Anita .
2015. Brief. Bioinform.; 16(2):280-290. doi:10.1093/bib/bbu006

Translational Medicine and Patient Safety in Europe: TRANSFoRm-Architecture for the Learning Health System in Europe

Delaney Brendan C., Curcin Vasa, Andreasson Anna, Arvanitis Theodoros N., Bastiaens Hilde, Corrigan Derek, Ethier Jean-Francois, Kostopoulou Olga, Kuchinke Wolfgang, McGilchrist Mark, van Royen Paul, Wagner Peter .
2015. Biomed Res Int; 2015():961526. doi:10.1155/2015/961526

Thromboembolic events 7-11 years after catheter ablation of atrial fibrillation

Tran Van Nam, Tessitore Elena, Gentil-Baron Pascale, Jannot Anne-Sophie, Sunthorn Henri, Burri Haran, Mach François, Shah Dipen .
2015. Pacing Clin Electrophysiol; 38(4):499-506. doi:10.1111/pace.12588

TRANSFoRm: Implementing a Learning Healthcare System in Europe through Embedding Clinical Research into Clinical Practice

Keung Sarah N. Lim Choi, Zhao Lei, Arvanitis Theodoros N., Curcin Vasa, Delaney Brendan, Ethier Jean-Francois, Burgun Anita, McGilchrist Mark, Brodka Piotr, Tuliglowicz Wodzimierz, Andreasson Anna .
2015. In: Bui T. X.Sprague R. H., editor.2015 48th Hawaii International Conference on System Sciences (hicss).Los Alamitos:Ieee Computer Soc;2015.3176-3185.. doi:

Reviewing 741 patients records in two hours with FASTVISU.

Escudie Jean-Baptiste, Jannot Anne-Sophie, Zapletal Eric, Cohen Sarah, Malamut Georgia, Burgun Anita, Rance Bastien .
2015. AMIA Annu Symp Proc; 2015():553-559. doi:

Reviewing 741 patients records in two hours with FASTVISU

Escudié Jean-Baptiste, Jannot Anne-Sophie, Zapletal Eric, Cohen Sarah, Malamut Georgia, Burgun Anita, Rance Bastien .
2015. AMIA Annu Symp Proc; 2015():553-559. doi:

Patient Mortality Is Associated With Staff Resources and Workload in the ICU: A Multicenter Observational Study

Neuraz Antoine, Guérin Claude, Payet Cécile, Polazzi Stéphanie, Aubrun Frédéric, Dailler Frédéric, Lehot Jean-Jacques, Piriou Vincent, Neidecker Jean, Rimmelé Thomas, Schott Anne-Marie, Duclos Antoine .
2015. Crit. Care Med.:. doi:10.1097/CCM.0000000000001015

P < 5 × 10(-8) has emerged as a standard of statistical significance for genome-wide association studies

Jannot Anne-Sophie, Ehret Georg, Perneger Thomas .
2015. J Clin Epidemiol; 68(4):460-465. doi:10.1016/j.jclinepi.2015.01.001

Outcome in acute heart failure: prognostic value of acute kidney injury and worsening renal function

Berra Gregory, Garin Nicolas, Stirnemann Jérôme, Jannot Anne-Sophie, Martin Pierre-Yves, Perrier Arnaud, Carballo Sebastian .
2015. J. Card. Fail.; 21(5):382-390. doi:10.1016/j.cardfail.2014.12.015

Methodological Considerations Deriving from a PHeWAS and LaboWAS on UGT1A Genotype

Jannot A.-S., Loriot M.-A., Narjoz C., Burgun A., Zohar S. .
2015. Hum. Hered.; 79(1):38-39. doi:

Kidney transplant recipients carrying the CYP3A4*22 allelic variant have reduced tacrolimus clearance and often reach supratherapeutic tacrolimus concentrations

Pallet N., Jannot A.-S., El Bahri M., Etienne I., Buchler M., de Ligny B. H., Choukroun G., Colosio C., Thierry A., Vigneau C., Moulin B., Le Meur Y., Heng A.-E., Subra J.-F., Legendre C., Beaune P., Alberti C., Loriot M. A., Thervet E. .
2015. Am. J. Transplant.; 15(3):800-805. doi:10.1111/ajt.13059

Influence de la dotation en personnel et de la charge de travail sur la mortalité en réanimation : une étude multicentrique observationnelle

Neuraz A., Guérin C., Payet C., Polazzi S., Schott A. -M., Duclos A. .
2015. Revue d'Épidémiologie et de Santé Publique; 63, Supplement 1():S5-S6. doi:10.1016/j.respe.2015.01.006

Improved liver function after portal vein embolization and an elective right hepatectomy

Meier Raphael P. H., Toso Christian, Terraz Sylvain, Breguet Romain, Berney Thierry, Andres Axel, Jannot Anne-Sophie, Rubbia-Brandt Laura, Morel Philippe, Majno Pietro E. .
2015. HPB (Oxford); 17(11):1009-1018. doi:10.1111/hpb.12501

Impact of recipient body mass index on short-term and long-term survival of pancreatic grafts

Bédat Benoît, Niclauss Nadja, Jannot Anne-Sophie, Andres Axel, Toso Christian, Morel Philippe, Berney Thierry .
2015. Transplantation; 99(1):94-99. doi:10.1097/TP.0000000000000226

How Drug Use by French Elderly Patients Has Changed During the Last Decade

Huon Jean-François, Lenain Emilie, LeGuen Julien, Chatellier Gilles, Sabatier Brigitte, Saint-Jean Olivier .
2015. Drugs Real World Outcomes; 2(4):327-333. doi:10.1007/s40801-015-0041-6

Fingerprinting Biomedical Terminologies--Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles.

Rance Bastien, Le Thai, Bodenreider Olivier .
2015. Stud Health Technol Inform; 216():771-775. doi:

Evaluation of Internet Social Networks using Net scoring Tool: A Case Study in Adverse Drug Reaction Mining

Katsahian Sandrine, Simond Moreau Erica, Leprovost Damien, Lardon Jeremy, Bousquet Cedric, Kerdelhué Gaétan, Abdellaoui Redhouane, Texier Nathalie, Burgun Anita, Boussadi Abdelali, Faviez Carole .
2015. Stud Health Technol Inform; 210():526-530. doi:

Dramatic reduction of clindamycin serum concentration in staphylococcal osteoarticular infection patients treated with the oral clindamycin-rifampicin combination

Bernard Aurélie, Kermarrec Gwénolé, Parize Perrine, Caruba Thibaut, Bouvet Anaïs, Mainardi Jean-Luc, Sabatier Brigitte, Nich Christophe .
2015. J. Infect.; 71(2):200-206. doi:10.1016/j.jinf.2015.03.013

Detection of Drug-Drug Interactions Inducing Acute Kidney Injury by Electronic Health Records Mining

Girardeau Yannick, Trivin Claire, Durieux Pierre, Le Beller Christine, Louet Agnes Lillo-Le, Neuraz Antoine, Degoulet Patrice, Avillach Paul .
2015. Drug Saf:. doi:10.1007/s40264-015-0311-y

Des données médicales à la connaissance : entrepôts et fouilles de données

Garcelon N. .
2015. Ann Dermatol Venereol; 142(12 Suppl):S389-390. doi:10.1016/j.annder.2015.10.171

Cost-effectiveness modelling of percutaneous coronary interventions in stable coronary artery disease

Beresniak Ariel, Caruba Thibaut, Sabatier Brigitte, Juillière Yves, Dubourg Olivier, Danchin Nicolas .
2015. World J Cardiol; 7(10):594-602. doi:10.4330/wjc.v7.i10.594

Clinical Data Integration Model Core Interoperability Ontology for Research Using Primary Care Data

Ethier J.-F., Curcin V., Barton A., McGilchrist M. M., Bastiaens H., Andreasson A., Rossiter J., Zhao L., Arvanitis T. N., Taweel A., Delaney B. C., Burgun A. .
2015. Methods Inf. Med.; 54(1):16-23. doi:10.3414/ME13-02-0024

Annual cost of stable coronary artery disease in France: A modeling study

Caruba Thibaut, Chevreul Karine, Zarca Kevin, Cadier Benjamin, Juillière Yves, Dubourg Olivier, Sabatier Brigitte, Danchin Nicolas .
2015. Arch Cardiovasc Dis; 108(11):576-588. doi:10.1016/j.acvd.2015.06.006

An Ontology-Based Annotation of Cardiac Implantable Electronic Devices to Detect Therapy Changes in a National Registry

Rosier Arnaud, Mabo Philippe, Chauvin Michel, Burgun Anita .
2015. IEEE J. Biomed. Health Inform.; 19(3):971-978. doi:10.1109/JBHI.2014.2338741

Adverse Drug Reaction Identification and Extraction in Social Media: A Scoping Review

Lardon Jeremy, Abdellaoui Redhouane, Bellet Florelle, Asfari Hadyl, Souvignet Julien, Texier Nathalie, Jaulent Marie-Christine, Beyens Marie-Noelle, Burgun Anita, Bousquet Cedric .
2015. J. Med. Internet Res.; 17(7):e171. doi:10.2196/jmir.4304

Acute graft-versus-host disease, invasive aspergillosis and Clostridium difficile colitis after peripheral blood stem cell transplantation: A complex network of causalities and a challenge for prevention

Khanafer Nagham, Neuraz Antoine, Bénet Thomas, Cour Martin, Persat Florence, Labussière Hélène, Argaud Laurent, Michallet Mauricette, Vanhems Philippe .
2015. Anaerobe; 33():98-100. doi:10.1016/j.anaerobe.2015.02.007

A simulation study of the interception of prescribing errors by clinical pharmacists in an acute hospital setting

Caruba Thibaut, Boussadi Abdelali, Lenain Emilie, Korb-Savoldelli Virginie, Gillaizeau Florence, Durieux Pierre, Sabatier Brigitte .
2015. J Eval Clin Pract; 21(4):673-680. doi:10.1111/jep.12363

[Improving practice and organisation of care: methodology for systematic reviews]

Zaugg Vincent, Savoldelli Virginie, Sabatier Brigitte, Durieux Pierre .
2014. Sante Publique; 26(5):655-667. doi:

[Improving health care practices and organization: methodology for intervention studies]

Zaugg Vincent, Savoldelli Virginie, Sabatier Brigitte, Durieux Pierre .
2014. Sante Publique; 26(4):519-529. doi:

What should be the basis for compulsory and optional health insurance premiums? Opinions of Swiss doctors

Jannot Anne-Sophie, Perneger Thomas V. .
2014. Swiss Med Wkly; 144():w13918. doi:10.4414/smw.2014.13918

Treatment for stable coronary artery disease: a network meta-analysis of cost-effectiveness studies

Caruba Thibaut, Katsahian Sandrine, Schramm Catherine, Charles Nelson Anaïs, Durieux Pierre, Bégué Dominique, Juillière Yves, Dubourg Olivier, Danchin Nicolas, Sabatier Brigitte .
2014. PLoS ONE; 9(6):e98371. doi:10.1371/journal.pone.0098371

The Cardiovascular Disease Ontology

Barton Adrien, Rosier Arnaud, Burgun Anita, Ethier Jean-Francois .
2014. ; 267():409-414. doi:10.3233/978-1-61499-438-1-409

Risk factors for early and late biliary complications in pediatric liver transplantation

Lüthold Samuel C., Kaseje Neema, Jannot Anne-Sophie, Mentha Gilles, Majno Pietro, Toso Christian, Belli Dominique C., McLin Valérie A., Wildhaber Barbara E. .
2014. Pediatr Transplant; 18(8):822-830. doi:10.1111/petr.12363

Perceived usefulness of nine quality improvement tools among Swiss physicians

Jannot A. S., Perneger T. .
2014. Qual Prim Care; 22(6):278-281. doi:

New combined serum creatinine and cystatin C quadratic formula for GFR assessment in children

Chehade Hassib, Cachat Francois, Jannot Anne-Sophie, Meyrat Blaise-Julien, Mosig Dolores, Bardy Daniel, Parvex Paloma, Girardin Eric .
2014. Clin J Am Soc Nephrol; 9(1):54-63. doi:10.2215/CJN.00940113

Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings

Pham Anne-Dominique, Neveol Aurelie, Lavergne Thomas, Yasunaga Daisuke, Clement Olivier, Meyer Guy, Morello Remy, Burgun Anita .
2014. BMC Bioinformatics; 15():266. doi:10.1186/1471-2105-15-266

NPHS2 mutations in steroid-resistant nephrotic syndrome: a mutation update and the associated phenotypic spectrum

Bouchireb Karim, Boyer Olivia, Gribouval Olivier, Nevo Fabien, Huynh-Cong Evelyne, Morinière Vincent, Campait Raphaëlle, Ars Elisabet, Brackman Damien, Dantal Jacques, Eckart Philippe, Gigante Maddalena, Lipska Beata S., Liutkus Aurélia, Megarbane André, Mohsin Nabil, Ozaltin Fatih, Saleem Moin A., Schaefer Franz, Soulami Kenza, Torra Roser, Garcelon Nicolas, Mollet Géraldine, Dahan Karin, Antignac Corinne .
2014. Hum. Mutat.; 35(2):178-186. doi:10.1002/humu.22485

Medical Vocabulary, Terminological Resources and Information Coding in the Health Domain

Duclos C., Burgun A., Lamy J. B., Landais P., Rodrigues J. M., Soualmia L., Zweigenbaum P. .
2014. In: Venot A.Burgun A.Quantin C., editor.Medical Informatics, E-Health: Fundamentals and Applications.New York:Springer;2014.11-41.. doi:

Medical Informatics as a Scientific Discipline

Venot A., Burgun A., Despres S., Degoulet P. .
2014. In: Venot A.Burgun A.Quantin C., editor.Medical Informatics, E-Health: Fundamentals and Applications.New York:Springer;2014.1-10.. doi:

Isolated tumor cells in sentinel lymph nodes of invasive breast cancer: cell displacement or metastasis?

Tille Jean-Christophe, Loubeyre Pierre, Bodmer Alexandre, Jannot Berthier Anne-Sophie, Rozenholc Alexandre, Tabouret-Viaud Claire, Monnier Sindy, Castiglione Monica .
2014. Breast J; 20(5):502-507. doi:10.1111/tbj.12306

Fighting the spread of AmpC-hyperproducing Enterobacteriaceae: beneficial effect of replacing ceftriaxone with cefotaxime

Grohs P., Kernéis S., Sabatier B., Lavollay M., Carbonnelle E., Rostane H., Souty C., Meyer G., Gutmann L., Mainardi J. L. .
2014. J. Antimicrob. Chemother.; 69(3):786-789. doi:10.1093/jac/dkt403

Evaluation of the prescription of osteoporosis treatment after a major osteoporotic fracture

Bouvet Anaïs, Sabatier Brigitte, Savoldelli Virginie, Caruba Thibaut, Pouchot Jacques .
2014. J Clin Rheumatol; 20(6):347-348. doi:10.1097/RHU.0000000000000154

Epidemiology of PID: Innovative New Way to Identify Patients in the CEREDIH Registry Through a Medical Data Warehouse

Garcelon N., Courteille V., Fischer A., Mahlaoui N. .
2014. J. Clin. Immunol.; 34():S361-S362. doi:

[Hospital information system performance for road traffic accidents analysis in a hospital recruitment based area]

Jannot A.-S., Fauconnier J. .
2013. Rev Epidemiol Sante Publique; 61(3):213-220. doi:10.1016/j.respe.2012.11.003

Validity of a clinical decision rule-based alert system for drug dose adjustment in patients with renal failure intended to improve pharmacists' analysis of medication orders in hospitals

Boussadi A., Caruba T., Karras A., Berdot S., Degoulet P., Durieux P., Sabatier B. .
2013. Int J Med Inform; 82(10):964-972. doi:10.1016/j.ijmedinf.2013.06.006

Phenome-wide association studies on a quantitative trait: application to TPMT enzyme activity and thiopurine therapy in pharmacogenomics

Neuraz Antoine, Chouchana Laurent, Malamut Georgia, Le Beller Christine, Roche Denis, Beaune Philippe, Degoulet Patrice, Burgun Anita, Loriot Marie-Anne, Avillach Paul .
2013. PLoS Comput. Biol.; 9(12):e1003405. doi:10.1371/journal.pcbi.1003405

OWL model of clinical trial eligibility criteria compatible with partially-known information

Dameron Olivier, Besana Paolo, Zekri Oussama, Bourde Annabel, Burgun Anita, Cuggia Marc .
2013. J. Biomed. Semant.; 4():17. doi:10.1186/2041-1480-4-17

Leveraging terminological resources for mapping between rare disease information sources.

Rance Bastien, Snyder Michelle, Lewis Janine, Bodenreider Olivier .
2013. Stud Health Technol Inform; 192():529-533. doi:

Genetic variations creating microRNA target sites in the FXN 3'-UTR affect frataxin expression in Friedreich ataxia

Bandiera Simonetta, Cartault François, Jannot Anne-Sophie, Hatem Elie, Girard Muriel, Rifai Laila, Loiseau Clemence, Munnich Arnold, Lyonnet Stanislas, Henrion-Caude Alexandra .
2013. PLoS ONE; 8(1):e54791. doi:10.1371/journal.pone.0054791

Full-text automated detection of surgical site infections secondary to neurosurgery in Rennes, France

Campillo-Gimenez Boris, Garcelon Nicolas, Jarno Pascal, Chapplain Jean Marc, Cuggia Marc .
2013. Stud Health Technol Inform; 192():572-575. doi:

Drug administration errors in hospital inpatients: a systematic review

Berdot Sarah, Gillaizeau Florence, Caruba Thibaut, Prognon Patrice, Durieux Pierre, Sabatier Brigitte .
2013. PLoS ONE; 8(6):e68856. doi:10.1371/journal.pone.0068856

Cost-effectiveness of mitral valve repair versus replacement by biologic or mechanical prosthesis

Beresniak Ariel, Sabatier Brigitte, Achouh Paul, Menasché Philippe, Fabiani Jean-Noel .
2013. Ann. Thorac. Surg.; 95(1):98-104. doi:10.1016/j.athoracsur.2012.08.005

Cost analysis of bivalirudin versus reference anticoagulants without GP IIb/IIIa inhibitors in patients undergoing percutaneous coronary intervention for acute coronary syndrome in routine clinical practice. Pompidou registry

Puymirat E., Cohen S., Védrenne G., Caruba T., Sabatier B., Danchin N., Durand E. .
2013. Ann Cardiol Angeiol (Paris); 62(2):89-94. doi:10.1016/j.ancard.2012.10.002

Combined serum creatinine and cystatin C Schwartz formula predicts kidney function better than the combined CKD-EPI formula in children

Chehade H., Cachat F., Jannot A.-S., Meyrat B.-J., Mosig D., Bardy D., Parvex P., Girardin E. .
2013. Am. J. Nephrol.; 38(4):300-306. doi:10.1159/000354920

Citation bias favoring statistically significant studies was present in medical research

Jannot Anne-Sophie, Agoritsas Thomas, Gayet-Ageron Angèle, Perneger Thomas V. .
2013. J Clin Epidemiol; 66(3):296-301. doi:10.1016/j.jclinepi.2012.09.015

Chromosome 21 scan in Down syndrome reveals DSCAM as a predisposing locus in Hirschsprung disease

Jannot Anne-Sophie, Pelet Anna, Henrion-Caude Alexandra, Chaoui Asma, Masse-Morel Marine, Arnold Stacey, Sanlaville Damien, Ceccherini Isabella, Borrego Salud, Hofstra Robert M. W., Munnich Arnold, Bondurand Nadège, Chakravarti Aravinda, Clerget-Darpoux Françoise, Amiel Jeanne, Lyonnet Stanislas .
2013. PLoS ONE; 8(5):e62519. doi:10.1371/journal.pone.0062519

Assessment of recurrence and complications following uncomplicated diverticulitis

Buchs N. C., Konrad-Mugnier B., Jannot A.-S., Poletti P.-A., Ambrosetti P., Gervaz P. .
2013. Br J Surg; 100(7):976-979; discussion 979. doi:10.1002/bjs.9119

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

Ethier Jean-Francois, Dameron Olivier, Curcin Vasa, McGilchrist Mark M., Verheij Robert A., Arvanitis Theodoros N., Taweel Adel, Delaney Brendan C., Burgun Anita .
2013. J. Am. Med. Inf. Assoc.; 20(5):986-994. doi:10.1136/amiajnl-2012-001312

RAVEL: Retrieval And Visualization in ELectronic health records

Thiessard Frantz, Mougin Fleur, Diallo Gayo, Jouhet Vianney, Cossin Sébastien, Garcelon Nicolas, Campillo Boris, Jouini Wassim, Grosjean Julien, Massari Philippe, Griffon Nicolas, Dupuch Marie, Tayalati Fayssal, Dugas Edwige, Balvet Antonio, Grabar Natalia, Pereira Suzanne, Frandji Bruno, Darmoni Stefan, Cuggia Marc .
2012. Stud Health Technol Inform; 180():194-198. doi:

Probability assignments to dispositions in ontologies

Barton Adrien, Burgun Anita, Duvauferrier Regis .
2012. In: Donnelly M.Guizzardi G., editor.Formal Ontology in Information Systems (FOIS 2012).Amsterdam:Ios Press;2012.3-14.. doi:

Pharmaceutical validation of medication orders using an OWL Ontology and Business Rules

Chniti Amina, Boussadi Abdelali, Degoulet Patrice, Albert Patrick, Charlet Jean .
2012. Stud Health Technol Inform; 180():1224-1226. doi:

Ontology and medical diagnosis

Bertaud-Gounot Valerie, Duvauferrier Regis, Burgun Anita .
2012. Inform. Health Soc. Care; 37(2):51-61. doi:10.3109/17538157.2011.590258

Male and female differential reproductive rate could explain parental transmission asymmetry of mutation origin in Hirschsprung disease

Jannot Anne-Sophie, Amiel Jeanne, Pelet Anna, Lantieri Francesca, Fernandez Raquel M., Verheij Joke B. G. M., Garcia-Barcelo Merce, Arnold Stacey, Ceccherini Isabella, Borrego Salud, Hofstra Robert M. W., Tam Paul K. H., Munnich Arnold, Chakravarti Aravinda, Clerget-Darpoux Françoise, Lyonnet Stanislas .
2012. Eur. J. Hum. Genet.; 20(9):917-920. doi:10.1038/ejhg.2012.35

MRI image artifact ontology: A Proposed Method for Improved Recognition

Lasbleiz Jeremy, Morelli John, Schnel Nicolas, Burgun Anita, Duvauferrier Regis, Saint Jalmes Herve .
2012. In: Mantas J.Andersen S. K.Mazzoleni M. C.Blobel B.Quaglini S.Moen A., editor.Quality of Life Through Quality of Information.Amsterdam:Ios Press;2012.103-107.. doi:

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms

Bettembourg Charles, Diot Christian, Burgun Anita, Dameron Olivier .
2012. J. Biomed. Semant.; 3():7. doi:10.1186/2041-1480-3-7

Evaluation of drug administration errors in a teaching hospital

Berdot Sarah, Sabatier Brigitte, Gillaizeau Florence, Caruba Thibaut, Prognon Patrice, Durieux Pierre .
2012. BMC Health Serv Res; 12():60. doi:10.1186/1472-6963-12-60

Comparing Drools and ontology reasoning approaches for telecardiology decision support

Van Hille Pascal, Jacques Julie, Taillard Julien, Rosier Arnaud, Delerue David, Burgun Anita, Dameron Olivier .
2012. In: Mantas J.Andersen S. K.Mazzoleni M. C.Blobel B.Quaglini S.Moen A., editor.Quality of Life Through Quality of Information.Amsterdam:Ios Press;2012.300-304.. doi:

Comment assurer la confidentialité dans les entrepôts de données biomédicaux ?

Riou C., Cuggia M., Garcelon N. .
2012. Revue d'Épidémiologie et de Santé Publique; 60():S19-S20. doi:10.1016/j.respe.2011.12.116

Building a Database of Articles from PubMed for Documentation of Adverse Drug Reactions Related to Antiretroviral Drugs

Bousquet Cedric, Garcelon Nicolas, Le Beller Christine, Wiss-Thebault Mathilde, Amardellh Florence, Souvignet Julien, Burgun Anita, Lillo-Le Louet Agnes .
2012. Drug Saf.; 35(12):1198-1199. doi:

Bioinformatic software for cerebrospinal fluid spectrophotometry in suspected subarachnoid haemorrhage

Collet Nicolas, Garcelon Nicolas, Robbe Valentin, Lucas-Clerc Catherine, Cuggia Marc, Bendavid Claude .
2012. Ann. Clin. Biochem.; 49(Pt 2):177-183. doi:10.1258/acb.2011.011048

Biliary atresia: does ethnicity matter?

Girard Muriel, Jannot Anne-Sophie, Besnard Marianne, Jacquemin Emmanuel, Henrion-Caude Alexandra .
2012. J. Hepatol.; 57(3):700-701; author reply 702. doi:10.1016/j.jhep.2012.03.011

Automated Classification of Free-text Pathology Reports for Registration of Incident Cases of Cancer

Jouhet V., Defossez G., Burgun A., le Beux P., Levillain P., Ingrand P., Claveau V. .
2012. Methods Inf. Med.; 51(3):242-251. doi:10.3414/ME11-01-0005

ASTEC: Automatic selection of clinical trials based on eligibility criteria

Cuggia M., Dufour J.-C., Zekri O., Gibaud I., Garde C., Bohec C., Duvauferrier R., Fieschi D., Besana P., Charlois L., Bourde A., Garcelon N., Laurent J., Fieschi M., Dameron O. .
2012. IRBM; 33(2):150-164. doi:10.1016/j.irbm.2012.02.001

A report on the large measles outbreak in Lyon, France, 2010 to 2011

Huoi C, Casalegno J S, Bénet T, Neuraz A, Billaud G, Eibach D, Mekki Y, Rudigoz R, Massardier J, Huissoud C, Massoud M, Gaucherand P, Claris O, Gillet Y, Floret D, Lina B, Vanhems P .
2012. Euro Surveill.; 17(36):20264. doi:

A mutation-centric approach to identifying pharmacogenomic relations in text.

Rance Bastien, Doughty Emily, Demner-Fushman Dina, Kann Maricel G., Bodenreider Olivier .
2012. J Biomed Inform; 45(5):835-841. doi:10.1016/j.jbi.2012.05.003

Polynesian ecology determines seasonality of biliary atresia

Girard Muriel, Jannot Anne-Sophie, Besnard Marianne, Leutenegger Anne-Louise, Jacquemin Emmanuel, Lyonnet Stanislas, Henrion-Caude Alexandra .
2011. Hepatology; 54(5):1893-1894. doi:10.1002/hep.24534

Differential contributions of rare and common, coding and noncoding Ret mutations to multifactorial Hirschsprung disease liability

Emison Eileen Sproat, Garcia-Barcelo Merce, Grice Elizabeth A., Lantieri Francesca, Amiel Jeanne, Burzynski Grzegorz, Fernandez Raquel M., Hao Li, Kashuk Carl, West Kristen, Miao Xiaoping, Tam Paul K. H., Griseri Paola, Ceccherini Isabella, Pelet Anna, Jannot Anne-Sophie, de Pontual Loic, Henrion-Caude Alexandra, Lyonnet Stanislas, Verheij Joke B. G. M., Hofstra Robert M. W., Antiñolo Guillermo, Borrego Salud, McCallion Andrew S., Chakravarti Aravinda .
2010. Am. J. Hum. Genet.; 87(1):60-74. doi:10.1016/j.ajhg.2010.06.007

Allele variations in the OCA2 gene (pink-eyed-dilution locus) are associated with genetic susceptibility to melanoma

Jannot Anne-Sophie, Meziani Roubila, Bertrand Guylene, Gérard Benedicte, Descamps Vincent, Archimbaud Alain, Picard Catherine, Ollivaud Laurence, Basset-Seguin Nicole, Kerob Delphine, Lanternier Guy, Lebbe Celeste, Saiag P., Crickx Beatrice, Clerget-Darpoux Françoise, Grandchamp Bernard, Soufir Nadem, Melan-Cohort null .
2005. Eur. J. Hum. Genet.; 13(8):913-920. doi:10.1038/sj.ejhg.5201415

Association in multifactorial traits: how to deal with rare observations?

Jannot A.-S., Essioux L., Clerget-Darpoux F. .
2004. Hum. Hered.; 58(2):73-81. doi:10.1159/000083028

The Seventh Report of the Joint National Committee on Prevention, Detection, Evaluation, and Treatment of High Blood Pressure: the JNC 7 report

Chobanian Aram V., Bakris George L., Black Henry R., Cushman William C., Green Lee A., Izzo Joseph L., Jones Daniel W., Materson Barry J., Oparil Suzanne, Wright Jackson T., Roccella Edward J., , .
2003. JAMA; 289(19):2560-2572. doi:10.1001/jama.289.19.2560

Improved use of SNP information to detect the role of genes

Jannot A.-S., Essioux L., Reese M. G., Clerget-Darpoux F. .
2003. Genet. Epidemiol.; 25(2):158-167. doi:10.1002/gepi.10256

CARD15/NOD2 mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease

Lesage Suzanne, Zouali Habib, Cézard Jean-Pierre, Colombel Jean-Frédéric, Belaiche Jacques, Almer Sven, Tysk Curt, O’Morain Colm, Gassull Miquel, Binder Vibeke, Finkel Yigael, Modigliani Robert, Gower-Rousseau Corinne, Macry Jeanne, Merlin Françoise, Chamaillard Mathias, Jannot Anne-Sophie, Thomas Gilles, Hugot Jean-Pierre, , , .
2002. Am. J. Hum. Genet.; 70(4):845-857. doi:10.1086/339432